rs29516018 SNP Detail

Summary

• ID
  rs29516018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47259165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCTTCAT CATCGTCTTC GTCATCCTCC TCCTCCTCCT
  CACTCTCTTC CCTGGGACCC GGCATCTCGG GTTCCTTCTC GGATGAGGGC GGCACGGGGG
  Y
  GTCCTCTCCC TCCGCAGCGG GGGCCGCCGC CGCCGACATG CTGGGGGCCT GCGGGCGGGG
  AGGAAGCCGC ACGCTTCGGT TCTCTCGCTC GCGCGGGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss39077207	mCV25274246	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29516018					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47259165 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	657 bp upstream
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	491 bp proximal
Rr479040	regulatory region 479040	748 bp proximal
Tssr119626	transcription start site region 119626	97 bp downstream
Tssr119627	transcription start site region 119627	712 bp upstream
Tssr119628	transcription start site region 119628	724 bp upstream
Tssr122369	transcription start site region 122369	312 bp upstream
Tssr122370	transcription start site region 122370	165 bp upstream
Tssr122371	transcription start site region 122371	67 bp upstream
Tssr122372	transcription start site region 122372	within coordinates
Tssr122373	transcription start site region 122373	44 bp downstream
Tssr122374	transcription start site region 122374	101 bp downstream
Tssr122375	transcription start site region 122375	412 bp downstream
Tssr122376	transcription start site region 122376	430 bp downstream
Tssr122377	transcription start site region 122377	455 bp downstream
Tssr122378	transcription start site region 122378	487 bp downstream
Tssr122379	transcription start site region 122379	520 bp downstream
Tssr122380	transcription start site region 122380	533 bp downstream