rs29516474 SNP Detail

Summary

• ID
  rs29516474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53625682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT ATTACTGTGA ACCCAGGAGA
  R
  CCCACGAGGG TCTGGCCCAA ACTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39079504	mCV22986293	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss61805340	NES17735902	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A		G	G	G		G	G	G	G
ss149017701	ENSMUSSNP564401	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss324342427	CHEV_13_53567015	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29516474					SNP	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805340	NES17735902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53625682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	475 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	1066 bp downstream
Tssr122587	transcription start site region 122587	1089 bp downstream
Tssr122588	transcription start site region 122588	1154 bp downstream
Tssr122589	transcription start site region 122589	1176 bp downstream