rs29516524 SNP Detail

Summary

• ID
  rs29516524
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114482685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAATTATAAC AAACTCTTAA GTTGCGATAT ATTTTTTATT TTTGAAGCTG TCTTTAATAG
  ACATCTAGCT TACTGGAAGG TGACTGAATT CTGACATCTA ATGAGCTCAT ACATTTTAAT
  GGGGTGTTGC CCTGGTTCCA GTACATGAAA ACAATGCATT TTCATATAAA CATTAGTCAG
  AAAAACCAAG TCTTCAATAG CTTCTTATCT GGCTATAATT CATTGTTATC TTAAACTTTA
  AAACTTTACC ATGCATTTGT TATACTGACT CTAGATATGT ATATGCATGT ATGTATGCCT
  K
  TATGTATGTA TATGCATATT TACTCCAAAT ACAGATTCCA AACATATTTC ACATTTAAAA
  AAAATTACAT TTGTTAATGA AAATTCCAAT CACACCAAGT AGGCATAAAG TACTACAAAG
  ACATCAAATT TATTAAGGTC AGAAGCAGAA CCAAGATCTA TAAAATTGTA ATTTTCAGGA
  CTGGAGTGGG AGCTCAGTTG GTAAAGTGCA AGGGAGAGAG CCCAGTTCCT CGGCAGCCAT
  GTTAAAGGCC AGGCATGACT TACACTGGGA ATTTCAGCAG CGACACATGG AGAATGCGGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39077105	mCV25042969	ABI	CRAMUS_MOUSE	f	SNP		G					T		T
ss62042825	NES17146367	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T		G	T	G	G	T	G	G	T
ss145304686	ENSMUSSNP3724061	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29516524					SNP	T	G	T	T	T	T	T	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042825	NES17146367	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114482685 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	485 bp distal
Rr278350	regulatory region 278350	1678 bp proximal
Rr282460	regulatory region 282460	886 bp distal