rs29516721 SNP Detail

Summary

• ID
  rs29516721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71545610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT GTTTGCTTTA CAGAGAAGTT
  Y
  ATGGAGCATA TCATCACTTA CCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39576573	mCV24393507	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss145892589	ENSMUSSNP1903430	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss325442175	CHEV_17_71587955	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29516721					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71545610 () rs orientation: forward

Symbol	Name	Function Class
Lpin2	lipin 2	within coordinates
Rr530454	regulatory region 530454	1387 bp distal
Tssr145747	transcription start site region 145747	114 bp downstream