rs29516731 SNP Detail

Summary

• ID
  rs29516731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153002161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCAGAAGA GATAACTAAA AATCTTAAGA CCAGTTTTGG
  CACAGTACTT AAGCAATGCT GAGTTTTCTG TTTAGCCCGT GGCTCTCTTT ATGGCTCAGG
  M
  TGGTCTTGAA CTCACCATGC CTTCCTTCCT CAGCATCCTG AGCGCAAAAA TTACCAGTGT
  GAGCCACTGA ACACGGATAA TGATAAAGAT GATAGTAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45325393	mCV22911102	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss147986876	ENSMUSSNP5418070	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29516731					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153002161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1160 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	876 bp downstream
Rr55859	regulatory region 55859	439 bp proximal
Rr397404	regulatory region 397404	899 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1062 bp upstream
Tssr20873	transcription start site region 20873	1051 bp upstream
Tssr20874	transcription start site region 20874	1080 bp upstream
Tssr20875	transcription start site region 20875	1283 bp upstream
Tssr20876	transcription start site region 20876	1687 bp upstream
Tssr20877	transcription start site region 20877	1717 bp upstream
Tssr26883	transcription start site region 26883	1219 bp downstream