rs29516776 SNP Detail

Summary

• ID
  rs29516776
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGATGCAC GCTGCTGCTC CTGCCTATCC CGGATGACAA
  GCTGCTCCCG CTCAGGGTAC TGAGAGTCCT CCTCAGGCCT GGCCAACAGG CCAGCTGGTA
  S
  CTGTGTGTGC TGATCGAGTT TCTCAGCTCC TACCCGAGTG CCATCCGCCA CCGCCTGCCC
  TTGGATGGAT GCCTGTTGGT GCTCCTCACC GACAGCCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39078707	mCV23287381	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss49116822	NES12422092	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	C	G	C	G	G	G	G
ss149079697	ENSMUSSNP5826966	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29516776					SNP	G	G	G	G	G	G	G	G	C	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116822	NES12422092	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788039 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	Coding-NonSynonymous
Rr481236	regulatory region 481236	484 bp distal
Tssr4093	transcription start site region 4093	within coordinates
Tssr122874	transcription start site region 122874	53 bp upstream
Tssr122875	transcription start site region 122875	36 bp upstream