rs29516880 SNP Detail

Summary

• ID
  rs29516880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53615985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC CCAATCGCGC ATGCTTACTT
  M
  GCGAAGCAGC CAGCAGGAGA TAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39079608	mCV22985748	ABI	CRAMUS_MOUSE	f	SNP	C	C	A		C
ss61805365	NES17736117	PERLEGEN	MM_PANEL2	f	SNP			A	A		C		C	C	C
ss149017446	ENSMUSSNP5496739	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss324342370	CHEV_13_53557318	CHEVERUD	SCREENING_POP	f	SNP							C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29516880					SNP	C	C	A	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805365	NES17736117	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53615985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	within coordinates
Gm33763	predicted gene, 33763	120 bp upstream
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	1255 bp proximal
Rr480050	regulatory region 480050	within coordinates
Rr480051	regulatory region 480051	80 bp proximal
Rr480052	regulatory region 480052	173 bp proximal