rs29517349 SNP Detail

Summary

• ID
  rs29517349
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127546339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCCTC CCTCCTTCCA
  TTGTCTTGGT ATCTCTTCAC AGCAATAGAA TACTATGACT TGGACTTAAA CTATCCCAGG
  AGTAGTTTTG ACAACATTTC ATAATAGAAT CAACAAAAAG ATGGCCAGAT GCATGGGCCA
  ACAATAACAA AGCGATAGAC TCCACACTTC CCACTGTCCA ACAATCTTTT ATTTGCTCGA
  K
  GTCATTCAGC AAATACTCAA TGGTGAAGAT CACAGACAGT TCCCAGGCTA AAGAAAAAGA
  AAAGAGAGAG AGAAATGGTG GCTTTTCAAG ACATTGGGGC AATTAGTAAC CGGTAAACAG
  TGGCGAAGCT AAGCCTGCAC ACACACACCC ATGTCCCAGC CCCACTCCAA CATACTTCAG
  GCCCCCATCC CCACCCCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45324020	mCV22278187	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29517349					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127546339 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	1810 bp distal
Gm10765	predicted gene 10765	708 bp downstream
Mall	mal, T cell differentiation protein-like	within coordinates
Tssr20034	transcription start site region 20034	1998 bp downstream
Tssr26137	transcription start site region 26137	1066 bp downstream
Tssr26138	transcription start site region 26138	1248 bp downstream
Tssr26139	transcription start site region 26139	1327 bp downstream
Tssr26140	transcription start site region 26140	1350 bp downstream