rs29517803 SNP Detail

Summary

• ID
  rs29517803
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156038459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA ATGCTTCTGG TGACCTCAGC
  S
  GTCACGGGTG AGTGCGGACT CGGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45324732	mCV23684529	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss148068243	ENSMUSSNP3737976	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
ss320578149	CHEV_2_156022275	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29517803					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156038459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	within coordinates
Gm75148	predicted gene, 75148	within coordinates
Phf20	PHD finger protein 20	108 bp upstream
Rr374121	regulatory region 374121	1302 bp downstream
Rr397432	regulatory region 397432	within coordinates
Rr568208	regulatory region 568208	1641 bp distal
Rr568209	regulatory region 568209	within coordinates
Rr568210	regulatory region 568210	154 bp proximal
Tssr21145	transcription start site region 21145	168 bp upstream
Tssr27045	transcription start site region 27045	within coordinates