rs29517820 SNP Detail

Summary

• ID
  rs29517820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69886473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT AGTAGAATCA GTGTCAGGTA
  Y
  AGAGACCAGG TACAGAAACA GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39078417	mCV22672997	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144574012	ENSMUSSNP127471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324406497	CHEV_13_69877232	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29517820					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69886473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5814	CpG island 5814	within coordinates
Gm60959	predicted gene, 60959	282 bp upstream
Gm60969	predicted gene, 60969	1861 bp downstream
Rr482198	regulatory region 482198	within coordinates
Rr482199	regulatory region 482199	1525 bp proximal
Rr482200	regulatory region 482200	1560 bp proximal
Rr482201	regulatory region 482201	1647 bp proximal
Tssr123143	transcription start site region 123143	574 bp downstream
Tssr123144	transcription start site region 123144	602 bp downstream
Tssr123145	transcription start site region 123145	627 bp downstream
Tssr123146	transcription start site region 123146	1064 bp downstream
Tssr123147	transcription start site region 123147	1491 bp downstream
Ube2ql1	ubiquitin-conjugating enzyme E2Q family-like 1	within coordinates