rs29518041 SNP Detail

Summary

• ID
  rs29518041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84211230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTCGGCT ACTTGTGGGG TGGGGTGAGG TGAGGTGAGG
  TGCTGAGGCG GGAAGATCCC AAGTTCAAGA GCTGCTTGGG CTACACAGTG AGTTCAAGGC
  Y
  ACCCTGAGCA GCTTTGGTGA GCTCCAAGGT GAAGTGGGCT TAGGAATGCA GCTCTCACTT
  AGCACCTACA GCGCCTCAGG CTTCCGTTCC CAGAACAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39576677	mCV23105647	ABI	CRAMUS_MOUSE	f	SNP	C	C						T
ss48384688	NES12283174	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C
ss146124404	ENSMUSSNP687412	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29518041					SNP	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384688	NES12283174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84211230 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	8 bp downstream
Rr531899	regulatory region 531899	827 bp distal
Rr531900	regulatory region 531900	within coordinates
Rr531901	regulatory region 531901	236 bp distal
Tssr146015	transcription start site region 146015	1847 bp upstream