rs29518057 SNP Detail

Summary

• ID
  rs29518057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCACCCTC CAAAAAATAT TAGAAAGAAA GAGAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AAGAGAGAGA GAGAGAGAAA GAGAGAGAAA GAGAGAAAGA
  R
  AGAAAGAAAG AAAGAAAGAA AGAAAGAGAA GAGAGAGAGA AAGAAAGGAA GAAAGGAACA
  AAGAAAGAAG GAAAGAAAGA AAAGAAGGAA AAGAAAACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39578056	mCV25232045	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145758528	ENSMUSSNP1870646	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29518057					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210591 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	within coordinates
Rr370289	regulatory region 370289	516 bp upstream
Rr405357	regulatory region 405357	232 bp upstream
Tssr145177	transcription start site region 145177	642 bp upstream
Tssr148690	transcription start site region 148690	357 bp downstream
Tssr148691	transcription start site region 148691	387 bp downstream