rs29518313 SNP Detail

Summary

• ID
  rs29518313
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162503688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA TCACAACACA TCTCTTTCTC
  W
  TGTCCCTAAC CCCGCCCTAC ACACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45324039	mCV22771165	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss148193131	ENSMUSSNP2242475	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320601351	CHEV_2_162487504	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29518313					SNP	A	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162503688 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	within coordinates
Cpgi12617	CpG island 12617	75 bp distal
Ptprt	protein tyrosine phosphatase receptor type T	621 bp upstream
Rr569218	regulatory region 569218	685 bp distal
Rr569221	regulatory region 569221	486 bp distal
Rr569222	regulatory region 569222	within coordinates
Rr569223	regulatory region 569223	1503 bp proximal
Tssr21417	transcription start site region 21417	529 bp downstream
Tssr21418	transcription start site region 21418	508 bp downstream
Tssr21419	transcription start site region 21419	448 bp downstream
Tssr27272	transcription start site region 27272	710 bp upstream
Tssr27273	transcription start site region 27273	678 bp upstream