rs29518461 SNP Detail

Summary

• ID
  rs29518461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC AGGCGATGGT AACTGAGTGC
  Y
  TGGGCGTCTA AAGGAGGTTG AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45326594	mCV22556916	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147341072	ENSMUSSNP2213108	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320477110	CHEV_2_119568792	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29518461					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	within coordinates
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	709 bp distal
Rr563569	regulatory region 563569	987 bp distal
Rr563570	regulatory region 563570	945 bp distal
Rr563571	regulatory region 563571	129 bp proximal
Rr563572	regulatory region 563572	161 bp proximal
Rr563573	regulatory region 563573	1462 bp proximal
Rr563574	regulatory region 563574	1630 bp proximal
Tssr19656	transcription start site region 19656	751 bp downstream
Tssr19657	transcription start site region 19657	725 bp downstream
Tssr19658	transcription start site region 19658	701 bp downstream
Tssr25827	transcription start site region 25827	104 bp downstream