rs29518466 SNP Detail

Summary

• ID
  rs29518466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31428003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC AAAATCCCTG TTAGTTAAAC
  Y
  GATAAACACC TGTGTGTCTT CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39577465	mCV24710812	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145458105	ENSMUSSNP6257571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325358923	CHEV_17_31345974	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29518466					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31428003 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	932 bp downstream
Tssr143654	transcription start site region 143654	917 bp downstream
Tssr147277	transcription start site region 147277	224 bp upstream
Tssr147278	transcription start site region 147278	194 bp upstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	within coordinates