rs29518716 SNP Detail

Summary

• ID
  rs29518716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93640451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCCAG TGGGAATGAT
  CATGCCCTTA ATGTTTACAT AATGCTAGTT TTCTCTGTTC TACACCCTTG GAATTTGATG
  ATCCTTCCTT TGCCCATATT CCTTACAAAT ATCTGCTTTT ATCTAGGTGT CTATAAAAGC
  AGCTTGGTCA GCAGGCCAGC CAGGGACCAC CTGGGATAAC TGCTGCTGCA GATGTGTGTG
  R
  GCACACTGCC CTCTGTCGGC CACAGGGCTC TCCATCCCTG TGTGGCCACA CTGCCCTCTG
  TTGCCCACAG GGCTCTCTAC ATTATCATCT ATCTTCTAGT AATCATCCTA TTGCCAGACA
  GAAACTCAAA GCTAACTTAA GATATCCACT AGAAACATAG ACGGTTCAGA CCAGCCATCT
  GGGCAGACAC AGGACACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45324534	mCV23861628	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146948875	ENSMUSSNP2730182	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320397088	CHEV_2_93650263	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29518716					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93640451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			within coordinates
Rr561282	regulatory region 561282			3 bp proximal
Rr561283	regulatory region 561283			48 bp proximal
Rr561284	regulatory region 561284			1952 bp proximal