rs29519374 SNP Detail

Summary

• ID
  rs29519374
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97374259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCCAAT TCTGCTCTTT
  GTCTGCCTCT CCAGCCAGTC CTCACACTGG TCCTTTCCCA GCCTGTCTTT GTGTTCTTAC
  TCCATGGGAA CTCTTCCATG GGCTCCTCAT GTTTATGCAG TCTAGACCAG AGGAGAGCCT
  TTTATTTATT TCTTGGACCC AGCAGGGGTT TCCTGCTTGG TTTTCTGTGT CAGAATCTGA
  S
  TTAATTGGAC TAATCAATCT AACGAATTTT TCTTAAGTTA TTCTACTATC TTAGCTCCAA
  GAGCTAGTCA TTGAAGCTAA TTGGTGGCAC CCCCACGGGT TAAATTTCAC TTCACCAGGC
  ATGCTTTGTG AGGTCATTTC ACACACTGGA AATAATGCCT TCCTTCCATC TGTCCCTTAA
  AAGGTTTCTG GCAAATGTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45324342	mCV23175851	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss146996118	ENSMUSSNP4523315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29519374					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97374259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561454	regulatory region 561454			within coordinates