rs29519403 SNP Detail

Summary

• ID
  rs29519403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGTTGAGT GAACTGTTGA AGGTGGGACA TAGTTGGAGG
  ATGTAGGTCA CTGGGGAATA TGACTTTAAA GGGTATATCT TGTCCCTGGT CCCTTCCTCT
  S
  TAGCTCTGCT TCCTCGCTGT CACAAGGTGA GCTCTTTCCT CCACCATGCC CTCACCTCAC
  TACAGCTGTA GGAGTAGCAG AGCCTCCTCA CCATGACTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45824395	mCV23207940	ABI	CRAMUS_MOUSE	f	SNP	G	G			G	C
ss47614530	NES10281260	PERLEGEN	MM_PANEL2	f	SNP				G		C	G		C	C
ss148098465	ENSMUSSNP1307018	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			C
ss321496127	CHEV_5_24151327	CHEVERUD	SCREENING_POP	f	SNP								C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29519403					SNP	G	G	G	G	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47614530	NES10281260	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850507 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	46 bp downstream
Tssr45439	transcription start site region 45439	39 bp downstream
Tssr45440	transcription start site region 45440	26 bp downstream
Tssr45441	transcription start site region 45441	9 bp downstream
Tssr45442	transcription start site region 45442	3 bp downstream