rs29519412 SNP Detail

Summary

• ID
  rs29519412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90947473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG ACCAGTTCTC TGGACGACTC
  R
  GAGATAAGCA TAGCAGTGCA TACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45324049	mCV22767216	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss320391694	CHEV_2_90957285	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29519412					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90947473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	1498 bp distal
Cpgi11897	CpG island 11897	1948 bp proximal
Mybpc3	myosin binding protein C, cardiac	1016 bp upstream
Rr560651	regulatory region 560651	1918 bp distal
Rr560652	regulatory region 560652	1855 bp distal
Rr560653	regulatory region 560653	526 bp proximal
Spi1	Spi-1 proto-oncogene	1369 bp downstream
Tssr18853	transcription start site region 18853	1957 bp downstream
Tssr18854	transcription start site region 18854	1915 bp downstream
Tssr18855	transcription start site region 18855	1738 bp downstream
Tssr18856	transcription start site region 18856	1690 bp downstream
Tssr18857	transcription start site region 18857	1574 bp downstream
Tssr18858	transcription start site region 18858	1531 bp downstream
Tssr18859	transcription start site region 18859	1426 bp downstream
Tssr18860	transcription start site region 18860	1008 bp upstream
Tssr18861	transcription start site region 18861	1782 bp upstream
Tssr18862	transcription start site region 18862	1821 bp upstream
Tssr18863	transcription start site region 18863	1845 bp upstream
Tssr18864	transcription start site region 18864	1911 bp upstream
Tssr25158	transcription start site region 25158	1371 bp upstream