rs29519522 SNP Detail

Summary

• ID
  rs29519522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152634847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGCCTCCA ACTAGTCCGG ACAAGTCCTG GGTATTTTCA GCCACCTTTA TCTGATTAGA
  AATGTTTGGA ATTCCACTGG CTGAAGGCAA GCAATCTGGA GGATTATGCA ATGGGTACAA
  ATCTCCAGAA TGCCCTTCCC TCTGCTCTTC CCCCTCTGCT ACGCATGAAT GCACCCCACC
  CTCCAAATAT CTGAAACCTT AGAGGTCTTT GTGGGCCACA TCCACAACCC AGGCTCCTCA
  GCCCTTCACC GTGCAGAGCT ACAGGCTGCA GACACTCAGG GGAGTGCCAC CCAAAGGTGT
  R
  CTATCCAAGC AACTGATAAT ACACATCATT ACCACGAAGT CTAGAACAGC TAACTATCTG
  CTCAGGTATA TGGACTCCTC AGAAATCTCA GTGTCATAAT GTGTGGCTCA ATAGATAGAC
  ACTGAAATCC AGGTACTTGC CCAACGACCA CCAGCTATAA GTCAAAGCCT GGTCTTAGGC
  CTCCTGACTC CTGGGGCAAA GACTGCTAAG CCTGATGTTC TAGGGTACAG GAACAGCTGC
  ACCCATTCCA CAGGCATGGC AGCAGAATCA AATGGCCCAC AGTATATGCC CAATAAATAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45324750	mCV27575575	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29519522					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152634847 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l1	BCL2-like 1	within coordinates
Rr367333	regulatory region 367333	1514 bp upstream
Rr374092	regulatory region 374092	within coordinates
Rr567472	regulatory region 567472	within coordinates
Rr567473	regulatory region 567473	615 bp proximal
Rr567474	regulatory region 567474	1279 bp proximal
Tssr26859	transcription start site region 26859	342 bp upstream