rs29519677 SNP Detail

Summary

• ID
  rs29519677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24035161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC GATCCAGAAC ACCAGCACGA
  M
  GACGATCTCG AAGTAGAAGT CTTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss39579443	mCV22837873	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss145333363	ENSMUSSNP5585512	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29519677					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24035161 () rs orientation: forward

Symbol	Name	Function Class
Rr340683	regulatory region 340683	within coordinates
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	996 bp downstream
Tssr142966	transcription start site region 142966	949 bp downstream
Tssr142967	transcription start site region 142967	903 bp downstream
Tssr142968	transcription start site region 142968	882 bp downstream
Tssr142969	transcription start site region 142969	120 bp downstream
Tssr142970	transcription start site region 142970	86 bp downstream
Tssr142971	transcription start site region 142971	17 bp downstream
Tssr142972	transcription start site region 142972	10 bp upstream
Tssr142973	transcription start site region 142973	24 bp upstream
Tssr142974	transcription start site region 142974	61 bp upstream
Tssr142975	transcription start site region 142975	85 bp upstream
Tssr142976	transcription start site region 142976	113 bp upstream
Tssr142977	transcription start site region 142977	171 bp upstream
Tssr142978	transcription start site region 142978	216 bp upstream
Tssr146670	transcription start site region 146670	917 bp upstream