rs29519778 SNP Detail

Summary

• ID
  rs29519778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119825186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCAGCCCC CCTTGCGACT CCCATCCCCG CAGTGCTGGG
  GGACCTGCAG GGCTGGAGTG CCTTGGAGAT CCGTGGATAT AAGGTCATGA ATGCTGGTAC
  Y
  GGTTAGAACC CTCCGGGCGC CCGCCCACCA GCCCGCCAGT GGGGAAGATC GGCTCCAGGC
  TGCGCTGGCG TCTGAGACCG GACGGGAGGG GCTGAGGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45823999	mCV24632682	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149174101	ENSMUSSNP6799591	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321666000	CHEV_5_120137130	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29519778					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119825186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	within coordinates
Cpgi16461	CpG island 16461	767 bp proximal
Gm71505	predicted gene, 71505	1043 bp upstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	256 bp downstream