rs29519803 SNP Detail

Summary

• ID
  rs29519803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164673668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCCTG TCTCAAAAAA
  CCAAAAAGAG CCGGGCATGG TGGCACACAC CTTTAATCCC AGCATTAGGG AGGCAGAGGC
  AGGCGGATCT CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TAAGTTCCAG GACAGCCAAG
  GCTAGACAGA GAAACCCTGT CTTGAAAACA AACAAACAAA CAAAACAAAA CAAAAAGAAA
  R
  AATTTCTCAA CCTGGAGTTT GTGACAGCTC CAAACCCACA TGTCCAAATC TCAGAACATT
  TTTCTAAGGA AAACACACAA CACATAGCTG AATGTGGTTA AAGGTGGCGG CTCATGGCTA
  ATCCCAACCA TCCCCACAGG CTGAGGCAGA AAAGACTGTA AAAAGTCCAT CCGGAGCCTA
  CCTGGGCTAC TTACTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45324660	mCV23739718	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29519803					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164673668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	964 bp proximal
Ctsa	cathepsin A	1125 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Intron
Rr397479	regulatory region 397479	245 bp downstream
Rr569727	regulatory region 569727	359 bp distal
Rr569728	regulatory region 569728	480 bp proximal
Rr569729	regulatory region 569729	701 bp proximal
Rr569730	regulatory region 569730	1698 bp proximal
Tssr21656	transcription start site region 21656	1114 bp upstream
Tssr21657	transcription start site region 21657	1133 bp upstream
Tssr21658	transcription start site region 21658	1211 bp upstream
Tssr27546	transcription start site region 27546	1690 bp downstream