rs29519873 SNP Detail

Summary

• ID
  rs29519873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3811075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAATTC TTCCTTCACG
  GTAATGATTA TAATTTTGGC ACTATGCCAT ATTGTTTTAA CAAATCTCCA AAGCAAGGGA
  GATTAAGATT AAGATAAAGA TTAGGTGGTC ACTAACGTGT TACTTCATTT GATTTAGAGA
  AGGGAGGTTA TATTATGCAA CAGTTGTTGG AAACAATTAT TGTTTAATTA AATTTAAGGT
  Y
  GTAAGTTTTC GTAGACTAGA AATTGGATAT AGGACTTCAA AAAGCAGATA GGAAAGGAAC
  AAAAAAATTT AATGAGCCCA GTGTGCGTCA GGAAAGGAAA CGCACAGGAA ATGTAAATAG
  AAAACTTAAC AGAATTGGTT ACATAAAAGG TATCGTGGCA AATAGCGGCT TGCTCTTGAG
  ACACAGGCTG GTCCTGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45327813	mCV24522144	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146263102	ENSMUSSNP3754862	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29519873					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3811075 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	359 bp proximal
Tssr15925	transcription start site region 15925	157 bp upstream