rs29520212 SNP Detail

Summary

• ID
  rs29520212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52522494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GCTTGCTATG AGCAAGGGCC
  R
  AAGTCTGATC TGCAGAATCC ATGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45824406	mCV25026893	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148440026	ENSMUSSNP5717532	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29520212					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52522494 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr65	DNA Segment, Chr 5, Derry C. Roopenian 65	1495 bp proximal
Rr611420	regulatory region 611420	1351 bp distal
Rr611421	regulatory region 611421	1056 bp distal
Sod3	superoxide dismutase 3, extracellular	Intron
Tssr46168	transcription start site region 46168	1229 bp downstream
Tssr46169	transcription start site region 46169	1197 bp downstream
Tssr46170	transcription start site region 46170	1172 bp downstream