rs29520387 SNP Detail

Summary

• ID
  rs29520387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155116587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA TTTGCTGTGT GGAAGTTGTT
  Y
  TTCTACCACC ATAGACAGAA AATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45327415	mCV22920239	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148049745	ENSMUSSNP243736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320572678	CHEV_2_155100403	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29520387					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155116587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	1369 bp proximal
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	1697 bp upstream
Tssr21073	transcription start site region 21073	1672 bp upstream
Tssr21074	transcription start site region 21074	1751 bp upstream
Tssr21075	transcription start site region 21075	1813 bp upstream
Tssr21076	transcription start site region 21076	1836 bp upstream
Tssr21077	transcription start site region 21077	1915 bp upstream
Tssr21078	transcription start site region 21078	1929 bp upstream
Tssr21079	transcription start site region 21079	1952 bp upstream