rs29520441 SNP Detail

Summary

• ID
  rs29520441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121948499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGAGTTGC AACAAGGTGA GGATTTCACT TCGGGATGGG
  AAAGGTTCCG AGAGGCACGG GGCTCGATCC TGAGGAGGCT CCCCAGTGGT TCATCCTCTC
  Y
  CACCAACCCA GGGGCCGGCG AGAGGCGAGC CCAGGACTCC CCTCCGGAGC GGCTCAGATT
  TCAGCCTCCT CCCACAGCCT GCAGCCGTCC CGCAGCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45326024	mCV25324158	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147409340	ENSMUSSNP6530381	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320487090	CHEV_2_121943754	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29520441					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121948499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	within coordinates
Gm75635	predicted gene, 75635	517 bp upstream
Rr55508	regulatory region 55508	within coordinates
Rr58060	regulatory region 58060	1299 bp distal
Rr373779	regulatory region 373779	within coordinates
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	1083 bp downstream
Tssr19803	transcription start site region 19803	521 bp upstream
Tssr25950	transcription start site region 25950	299 bp downstream
Tssr25951	transcription start site region 25951	346 bp downstream