rs29520441 SNP Detail

Summary

• ID
  rs29520441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121948499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGAGTTGC AACAAGGTGA GGATTTCACT TCGGGATGGG
  AAAGGTTCCG AGAGGCACGG GGCTCGATCC TGAGGAGGCT CCCCAGTGGT TCATCCTCTC
  Y
  CACCAACCCA GGGGCCGGCG AGAGGCGAGC CCAGGACTCC CCTCCGGAGC GGCTCAGATT
  TCAGCCTCCT CCCACAGCCT GCAGCCGTCC CGCAGCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45326024	mCV25324158	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147409340	ENSMUSSNP6530381	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320487090	CHEV_2_121943754	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29520441					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121948499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75635	predicted gene, 75635			517 bp upstream
Rr373779	regulatory region 373779			within coordinates
Rr563908	regulatory region 563908			358 bp proximal
Rr563909	regulatory region 563909			528 bp proximal
Spg11	SPG11, spatacsin vesicle trafficking associated			Intron
				Noncoding-Transcript-Variant
Tssr19802	transcription start site region 19802			1083 bp downstream
Tssr19803	transcription start site region 19803			521 bp upstream
Tssr25950	transcription start site region 25950			299 bp downstream
Tssr25951	transcription start site region 25951			346 bp downstream