rs29520486 SNP Detail

Summary

• ID
  rs29520486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93122288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCGATGGCCG TGTGTATCTC CTGTTTTATT CCACAAGTAT CCTTTTGTGG CTGTTAACAA
  AAGCCTCTTG CAGACACAGA GTCTCTCAAA CCCTGTGCAA CACCTGACTT CAGAGCCTGC
  CCTGTTCAGA TTTAGCCCAA CACTTTGTCT TGTTACCGTG TTTAGGGCGA TTAAAATCAC
  CACTGAGATT TTTAATGATA CATTTTATTT ATACAGCACC CCGCATTTTT ATAGCATTCG
  CCTCCGGCAA GATCGGTGAA TAATTTAGAA TAAGGAGTAA AACCAGCCTT CCATAGAATT
  Y
  TCAAAACCAC ATCTGCTGCC CATTTCCTAA CCCTCCCTGT ACCTGCTGTG AGAGCCCCCC
  CCACCCCACC CCCGCACACC TTCAGCCTCA GTTTCCCAAC AGGAAGAAGA TTCCCACTCG
  GTACAGCTTG CAGATGGTTA TGTGCTGGCA TTAGAGCAGC CTGAGTTATC TGAGTTCTTT
  TTATGCTCTG GGCAGAGCTC AGAGCTCTGA GACATAAAAG AGAGCAAGAT GGAAGGACTG
  GCTACCTTTG GAGTCCACTG TCCAGGAAGA AAAGCAGACA GTGGACAAAG AATGTCACAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45326315	mCV23856426	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29520486					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93122288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561147	regulatory region 561147			180 bp distal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant