rs29520597 SNP Detail

Summary

• ID
  rs29520597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69690611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT CTTTAAAAAA GGAAAATTTA
  R
  CATTTATGTC TCACAGTAAG TAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45325720	mCV25170086	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146730532	ENSMUSSNP6182860	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320332350	CHEV_2_69698324	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29520597					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69690611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11719	CpG island 11719	960 bp proximal
Rr397021	regulatory region 397021	90 bp upstream
Rr397022	regulatory region 397022	1095 bp upstream
Rr558482	regulatory region 558482	1927 bp distal
Rr558483	regulatory region 558483	805 bp proximal
Rr558484	regulatory region 558484	1306 bp proximal
Ssb	small RNA binding exonuclease protection factor La	1352 bp upstream
Tssr18173	transcription start site region 18173	1310 bp upstream
Tssr18174	transcription start site region 18174	1318 bp upstream
Tssr18175	transcription start site region 18175	1371 bp upstream
Tssr18176	transcription start site region 18176	1908 bp upstream