rs29521015 SNP Detail

Summary

• ID
  rs29521015
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:69147270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGCTCTG ACCAAGAAAG TCCTCAAACA TTACTTTTGA GTCTCCACAT CCACAGGATT
  TACAAGTATG TCAGGGCTCC CACTGGCTGC CAGCCAGGAA GCTTTCAGAT AGAGGGTCTT
  GGAACATGTG GGGGATGGGA TGGGGAGAGA GGAAAGTTTT TCTCAAACTG GTTCAAACCA
  CCGTTTCTTT CCATCGCACA AACTGGTCTT TGATTTGTGT ACACAGCTTT GGGGTGGGGG
  TGGAGACACA CCTGGAGTTC CATCCAGGGG CAGGGGCAAT CCTGGCACGT GGGCGGTTTC
  M
  GGCAGCCAAG CCCAGCACCC TCTGACTGTG TTCCTCTACT TTGCGCAGGA GGAGGTGACC
  AAGCAGCTAG TGGGCAGCTG GCGCTCCCCC CACACAAGCT TCAGCCGCAG CAGCCCTACG
  GGCTAGCCTT GCATTCCACC AGTTCACCAT GATCGCCACC GGTGGCCTAC TGAGAATATC
  TGCGAGAAAG CAGGATCCTC TCCGGCCCCC CAGCCAGGTC CCTAAGCGCA AGAGGAAAGC
  CAAGAAGAGG CGTAAAAACG ACGTGGTGGT GGTGAAAGGC AAACTGAAGC TGTGCTCCAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39577593	mCV24540693	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29521015					SNP	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:69147270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9445	CpG island 9445	520 bp proximal
Rr530161	regulatory region 530161	1541 bp proximal
Tmem200c	transmembrane protein 200C	within coordinates