rs29521135 SNP Detail

Summary

• ID
  rs29521135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179982967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGGAG GATACAGAGC
  TGAGCCGCCA AGCTCTTTGC TGAACTCTCA GGCAAGAGCA CTGGGCCATT CATGTCCTCA
  GAGCAGCCCC AGTTCGTGCA TCCAGCCTAC CCAGGACTCA CTAAGTAGTC GCCTGGTTGT
  GATTCCACCT CCAGGGCTGA CAGACTGGTA GTCATTTCTC CCTGACTGTT CTCCATGATG
  K
  CTGCCTTGCC CAGCCACCAT TAGAGTCTGT CCCAGGCTGT GCCTGCCTCT GAACCCTGTC
  TGGAAGTTGC CTTTCTCCTG AGGAGGAATT TCTCACCAGC AGCTACAGCT GCAACTGGAA
  ATCTACAAAA CAGTTTTCTG CAGATGAATC TTACTAGAAA ACCTGGTCCT CCCACCTCCC
  GTAGGCCTGG AGCCCCTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45327917	mCV22941114	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss148390588	ENSMUSSNP1109031	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss320631876	CHEV_2_180075879	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29521135					SNP	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179982967 () rs orientation: forward

Symbol	Name	Function Class
Gata5os	GATA binding protein 5, opposite strand	442 bp downstream
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	382 bp upstream
Rr572718	regulatory region 572718	730 bp distal
Rr572719	regulatory region 572719	106 bp proximal
Rr572720	regulatory region 572720	1804 bp proximal