rs29521221 SNP Detail

Summary

• ID
  rs29521221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25945165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CAGAAAGCTA ATATATGGGG
  Y
  ACAAGGCGGC ACTCTAAGGC CACGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39577701	mCV22829728	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss60255837	NES15704471	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		T	T	T	T		T	T	C	T		T
ss145394926	ENSMUSSNP1632124	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss325339114	CHEV_17_25863136	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29521221					SNP	C	C	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255837	NES15704471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25945165 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	within coordinates
Cpgi8774	CpG island 8774	686 bp proximal
Rpusd1	RNA pseudouridylate synthase domain containing 1	1479 bp upstream
Rr329897	regulatory region 329897	1965 bp distal
Rr339369	regulatory region 339369	35 bp proximal
Rr405102	regulatory region 405102	1311 bp upstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	1535 bp upstream
Tssr146846	transcription start site region 146846	1153 bp downstream
Tssr146847	transcription start site region 146847	1173 bp downstream