rs29522246 SNP Detail

Summary

• ID
  rs29522246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18120103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC CAGAGACTTC ATCTCAGGAT
  Y
  GATTCTTGCA GTTGATGTGA CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39578107	mCV22802848	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss145228045	ENSMUSSNP1989735	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325312436	CHEV_17_18036805	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29522246					SNP	C	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18120103 () rs orientation: forward

Symbol	Name	Function Class
Rr329600	regulatory region 329600	103 bp distal
Rr336961	regulatory region 336961	183 bp distal
Rr343850	regulatory region 343850	764 bp proximal
Rr343851	regulatory region 343851	923 bp proximal
Tssr142835	transcription start site region 142835	209 bp downstream