rs29522354 SNP Detail

Summary

• ID
  rs29522354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24660880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA AGGTACACAT CGTAGAGCGC
  R
  TCGATCTCTG CCACCGCCTG GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39580862	mCV24345651	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss145355270	ENSMUSSNP3013443	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325331719	CHEV_17_24578851	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29522354					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24660880 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
E4f1	E4F transcription factor 1	1872 bp downstream
Rr329769	regulatory region 329769	280 bp distal
Rr337043	regulatory region 337043	1977 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	1507 bp upstream
Tssr146731	transcription start site region 146731	251 bp downstream
Tssr146732	transcription start site region 146732	1171 bp downstream
Tssr146733	transcription start site region 146733	1187 bp downstream