rs29522465 SNP Detail

Summary

• ID
  rs29522465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164115977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC TAGAATTCTC TTTCTTTGCT
  R
  GGACTTCACA TGGTTTTGGT ATCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45326540	mCV23736620	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148221245	ENSMUSSNP1149975	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320605179	CHEV_2_164099793	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29522465					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164115977 () rs orientation: forward

Symbol	Name	Function Class
Svs4	seminal vesicle secretory protein 4	1899 bp downstream
Tssr21549	transcription start site region 21549	1895 bp upstream
Tssr27409	transcription start site region 27409	1921 bp downstream
Tssr27410	transcription start site region 27410	1944 bp downstream
Tssr27411	transcription start site region 27411	1981 bp downstream