rs29522557 SNP Detail

Summary

• ID
  rs29522557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46460784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAATCTGCC TGCCTCTGCC TCCCGAGTGC TGGGATTAAA GGCATGTGCC ACCATGCCCG
  GCTCTCTCTT CCTTCTTAAA ATGAGGTCTC CCTTATGCAC CCCAGCTGTC CTGGAACTGC
  CAATAAAAAC CAGGATGTCC TCAGAAAATT GGACATAGTA ATACCAGAGG ATCCCGCAAT
  ATCTCTCCTG AGCATATATC CAGAAGATGT CCCAACCGGT AAGAAGGACA CATGCTCCAC
  TATGTTCATA GCAGCCTTAT TTATAATAGC CAGAAGCTGG AAAGAACCAG AACCCAGATG
  Y
  CCCTCAACAG AGGAATGGAT ACAGAAAATG TGGTACATCT ACACAATGGA GTACTACTCA
  GCTATTTTTT TTTTTTTGAC AGGGTTTCTC TGTACAGCCC TGGCTGTCCT GGAACTCACT
  CTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC CAAGTGCTGG
  GATTAAAGGC ATGCACCACC ACGCCCGGCA CTACTCAGCT ATTAAAAAGA ATGAATTTAT
  GAAATTCCTA GGCAAATGGA TGGACCTGGA GGGCATCATC CTGAGTGAGG TAACCCAATC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39579876	mCV25216932	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29522557					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46460784 () rs orientation: forward

Symbol	Name	Function Class
Mad2l1bp	MAD2L1 binding protein	within coordinates
Rr339891	regulatory region 339891	1816 bp proximal
Rr341809	regulatory region 341809	184 bp distal
Rr341810	regulatory region 341810	617 bp proximal