rs29522684 SNP Detail

Summary

• ID
  rs29522684
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5892880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAAAGCCTA AGCCTTGGAA GTGAGGACCT GGGGTGGGAG GCACCATAGG TGAACCTCTG
  ATAGACCTGC GATGTGCGGG TAGCAGACAG ACTGGTACTC GGAGCTTTGA TTATGTCACC
  TTTACAAACA GCGTGCCTTT TCCAGATTTA TTTTTGACAC GTCTAAGCTA CTTCTGGCTT
  GATGAAAACT TTTTTTTTTT TTTAAAGATG GGTGTTTATA GAAGGTATAG GAAAGTGTTA
  AGGAATTTGG AAGGTCAGAA GTGCCTGATT TCATTTAGTC TGTTGAAGTT GGGGCCCAGA
  W
  AAATTCATTT TCTCTGTCCT GACTCTGTCT AGGTGTAGTG TTTATATGTA AATGAAGCTT
  CTTCAGAAAC CTACTGCTAC TGTTGAAATA ATTGCCTTGT TAGTAGTATA TCTGAGCAGT
  TGTTGCTTGG TTTTCCTAGA TATAAGACAA CTACCTACCT TTCAATATAC TTATATTGTG
  ACAAACTTTG TTGGAGATGA AACCTAATTT AAGCAGAGGA TTTTTGAGGT TTGTTGCCTA
  GACATTTCAG AAATTGAAAA TTCAATTACA GAGTTATCTT GCAACATTGA CAATGATTTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39578302	mCV23836997	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29522684					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5892880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8560	CpG island 8560	1461 bp distal
Cpgi8561	CpG island 8561	638 bp distal
Gm65471	predicted gene, 65471	739 bp upstream
Rr521222	regulatory region 521222	1266 bp distal
Rr521223	regulatory region 521223	750 bp distal
Rr521224	regulatory region 521224	249 bp distal
Rr521225	regulatory region 521225	333 bp proximal
Snx9	sorting nexin 9	within coordinates
Tssr142439	transcription start site region 142439	1334 bp downstream
Tssr142440	transcription start site region 142440	1228 bp downstream
Tssr142441	transcription start site region 142441	1195 bp downstream
Tssr142442	transcription start site region 142442	1142 bp downstream