rs29523139 SNP Detail

Summary

• ID
  rs29523139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164718754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG ATCTTTCACA AGCTGGTGGA
  Y
  TAAGATTGGG CTGGTGAGAT GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45326956	mCV23132291	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148232687	ENSMUSSNP2001186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320607033	CHEV_2_164702334	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29523139					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164718754 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	1453 bp downstream
Cpgi12676	CpG island 12676	1897 bp proximal
Rr569746	regulatory region 569746	1869 bp distal
Rr569747	regulatory region 569747	975 bp distal
Rr569748	regulatory region 569748	1059 bp proximal
Rr569749	regulatory region 569749	1764 bp proximal
Rr569750	regulatory region 569750	1829 bp proximal