rs29523166 SNP Detail

Summary

• ID
  rs29523166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48044628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC CAAAGCAGGC GGTAGACGCA
  R
  GCCTATGGCG GGTGTGACAG GCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39578599	mCV22831358	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145709089	ENSMUSSNP6701204	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325406579	CHEV_17_47870652	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29523166					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48044628 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr145027	transcription start site region 145027	1291 bp downstream
Tssr145028	transcription start site region 145028	1250 bp downstream
Tssr145029	transcription start site region 145029	1233 bp downstream
Tssr145030	transcription start site region 145030	738 bp downstream
Tssr145031	transcription start site region 145031	730 bp downstream
Tssr145032	transcription start site region 145032	645 bp downstream
Tssr145033	transcription start site region 145033	643 bp downstream
Tssr145034	transcription start site region 145034	632 bp downstream
Tssr145035	transcription start site region 145035	48 bp upstream
Tssr145036	transcription start site region 145036	56 bp upstream
Tssr145037	transcription start site region 145037	100 bp upstream
Tssr145038	transcription start site region 145038	110 bp upstream
Tssr145039	transcription start site region 145039	475 bp upstream
Tssr145040	transcription start site region 145040	499 bp upstream
Tssr145041	transcription start site region 145041	536 bp upstream
Tssr145042	transcription start site region 145042	554 bp upstream
Tssr145043	transcription start site region 145043	609 bp upstream
Tssr145044	transcription start site region 145044	626 bp upstream
Tssr145045	transcription start site region 145045	636 bp upstream
Tssr145046	transcription start site region 145046	655 bp upstream
Tssr145047	transcription start site region 145047	703 bp upstream
Tssr145048	transcription start site region 145048	735 bp upstream
Tssr148470	transcription start site region 148470	1265 bp upstream
Tssr148471	transcription start site region 148471	1243 bp upstream
Tssr148472	transcription start site region 148472	1229 bp upstream
Tssr148473	transcription start site region 148473	1215 bp upstream
Tssr148474	transcription start site region 148474	1197 bp upstream
Tssr148475	transcription start site region 148475	653 bp upstream
Tssr148476	transcription start site region 148476	626 bp upstream
Tssr148477	transcription start site region 148477	593 bp upstream
Tssr148478	transcription start site region 148478	95 bp downstream
Tssr148479	transcription start site region 148479	133 bp downstream
Tssr148480	transcription start site region 148480	611 bp downstream
Tssr148481	transcription start site region 148481	641 bp downstream
Tssr148482	transcription start site region 148482	772 bp downstream