rs29523518 SNP Detail

Summary

• ID
  rs29523518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112415860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT CTTACACACA CATACACGGA
  Y
  AGACAAGCAG AGAGATCACA TGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45824842	mCV24791738	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss149079768	ENSMUSSNP6492494	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss321645166	CHEV_5_112697014	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29523518					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112415860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1278 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Rr617312	regulatory region 617312	1293 bp distal
Tssr47978	transcription start site region 47978	469 bp downstream
Tssr47979	transcription start site region 47979	437 bp downstream
Tssr47980	transcription start site region 47980	1316 bp upstream
Tssr47981	transcription start site region 47981	1463 bp upstream
Tssr47982	transcription start site region 47982	1480 bp upstream
Tssr47983	transcription start site region 47983	1494 bp upstream
Tssr47984	transcription start site region 47984	1503 bp upstream
Tssr47985	transcription start site region 47985	1514 bp upstream
Tssr52559	transcription start site region 52559	632 bp upstream
Tssr52560	transcription start site region 52560	593 bp upstream
Tssr52561	transcription start site region 52561	1491 bp downstream
Tssr52562	transcription start site region 52562	1535 bp downstream