rs29524616 SNP Detail

Summary

• ID
  rs29524616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:69145838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAACCAG ATTTTAAAGG
  TTTGCAGATG TGGTCTCACT GTTGACACCT CCCTAAAACA TTTAGGATTT CTTTACTGAA
  TTCCAACCAA GTTCCAAAGA GATATTGTTC TTTGCAAACA ATAAAAAACC TGACTGCCAT
  TTGCTTGCCC ATGTGGAGAA AAGATCATAA CCAGATTGAT ATACCAGAAG GAATCAAGGG
  Y
  CATAGCTCCT CACTTAAGCA CCAATTAAAA GCGAAATTCT ACCCAAATAA CTTACATTTT
  CAAATCTATT CTACTACATG GACTGCCTTG CAAAGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTCCAA AGGCCTGTGA TGGTCATCTT TAAGAGCAAC ATAATGCCCT TAATTTTTAG
  CATCTCTGTT ATAGAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39579804	mCV24540702	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss145871969	ENSMUSSNP708189	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29524616					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:69145838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9444	CpG island 9444	983 bp distal
Cpgi9445	CpG island 9445	1952 bp proximal
Gm38593	predicted gene, 38593	1617 bp upstream
Rr530157	regulatory region 530157	1697 bp distal
Rr530158	regulatory region 530158	1668 bp distal
Rr530159	regulatory region 530159	1143 bp distal
Rr530160	regulatory region 530160	1531 bp distal
Tmem200c	transmembrane protein 200C	within coordinates
Tssr145621	transcription start site region 145621	1750 bp downstream