rs29525255 SNP Detail

Summary

• ID
  rs29525255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124046720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC CAGTACTGGA GTGAGGAGGG
  R
  TCTGGGGGGA GCTTGATGTC TGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45824358	mCV24597057	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss149200137	ENSMUSSNP2039192	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321672046	CHEV_5_124358666	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29525255					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124046720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	783 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	within coordinates
Rr399353	regulatory region 399353	1324 bp downstream
Tssr48807	transcription start site region 48807	1460 bp downstream
Tssr48808	transcription start site region 48808	1447 bp downstream
Tssr48809	transcription start site region 48809	1365 bp downstream
Tssr48810	transcription start site region 48810	1342 bp downstream
Tssr48811	transcription start site region 48811	1270 bp downstream
Tssr48812	transcription start site region 48812	1097 bp downstream
Tssr48813	transcription start site region 48813	1086 bp downstream
Tssr48814	transcription start site region 48814	1070 bp downstream
Tssr48815	transcription start site region 48815	1050 bp downstream
Tssr48816	transcription start site region 48816	1024 bp downstream
Tssr48817	transcription start site region 48817	543 bp downstream
Tssr48818	transcription start site region 48818	469 bp downstream
Tssr48819	transcription start site region 48819	433 bp upstream
Tssr48820	transcription start site region 48820	467 bp upstream
Tssr53283	transcription start site region 53283	1836 bp downstream