rs29525376 SNP Detail

Summary

• ID
  rs29525376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:117257855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG ATCTTATCCA CGGTGGTCCG
  M
  CAAGACAAGA CAAGGCGTGG GGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45825429	mCV23379612	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss149148358	ENSMUSSNP1669336	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss321658467	CHEV_5_117569799	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29525376					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117257855 () rs orientation: forward

Symbol	Name	Function Class
9530046B11Rik	RIKEN cDNA 9530046B11 gene	1067 bp downstream
Cpgi16405	CpG island 16405	within coordinates
Gm57263	predicted gene, 57263	within coordinates
Rr378521	regulatory region 378521	1189 bp upstream
Rr399292	regulatory region 399292	51 bp upstream
Rr618570	regulatory region 618570	1734 bp distal
Rr618571	regulatory region 618571	498 bp distal
Rr618572	regulatory region 618572	within coordinates
Rr618573	regulatory region 618573	243 bp proximal
Rr618574	regulatory region 618574	350 bp proximal
Taok3	TAO kinase 3	339 bp upstream
Tssr48350	transcription start site region 48350	330 bp upstream
Tssr48351	transcription start site region 48351	395 bp upstream
Tssr52880	transcription start site region 52880	86 bp downstream