rs29525610 SNP Detail

Summary

• ID
  rs29525610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56282519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAAAGAC TCTTTCAAGC
  AATCTTCTGC CCAGCAGTGA GATATCGGTG GTCTCTGCAG GAGTGGGCGC TGGGCTCAGC
  ATCTTGCACA CCTGTTGTCA GGTGACACCG TCAGCAGCAT CCCGCGCCTC CCATCTCTAC
  TCACCCCACC CCCAGAGACT CTCAGCTGTC CCTCTGCGCG CGGGGAGCCT CCAGTCTTCC
  R
  GAGTCACCTT AAAAATAACA CCTCCCCAGC ACAAAGCAAA CAAAAGGCGA GCGAGAGCCG
  CGGGGCTTCC ATAGCTCCTC TCCAGCCCGC CCCGGCCTGG GATTCCGTCC GCGAGTGGTC
  CCCAGGCCTC GCCTGCTCAG GCCTCGCGGC GGGTGCCCCA CCAGCCGGCC TCACAACGGC
  CTGTGGCTCG CGCCCCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39081227	mCV22993227	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss149040874	ENSMUSSNP6228754	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29525610					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56282519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	within coordinates
Macroh2a1	macroH2A.1 histone	within coordinates
Tssr4083	transcription start site region 4083	1357 bp downstream
Tssr122739	transcription start site region 122739	699 bp downstream
Tssr122740	transcription start site region 122740	721 bp downstream
Tssr122741	transcription start site region 122741	766 bp downstream
Tssr122742	transcription start site region 122742	812 bp downstream
Tssr122743	transcription start site region 122743	923 bp downstream
Tssr122744	transcription start site region 122744	950 bp downstream
Tssr122745	transcription start site region 122745	970 bp downstream
Tssr122746	transcription start site region 122746	1078 bp downstream
Tssr122747	transcription start site region 122747	1131 bp downstream
Tssr122748	transcription start site region 122748	1194 bp downstream
Tssr122749	transcription start site region 122749	1242 bp downstream
Tssr122750	transcription start site region 122750	1376 bp downstream