rs29525790 SNP Detail

Summary

• ID
  rs29525790
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGAATCC ACAGTGAGGG TCTGGGGATC TGGTTCATTC
  TAAGAAGTAG GGCATTTGTT CATCATGTAT ATGGGCTTGG TTTCTGTTCT CTATATTGTC
  W
  CCACCGCAAA ACAATAAGGA GAAAACTGAT ACAAAATACC ACAACTAAAT ACCGTAAATA
  CCAAAAACTA AAAGAGAAAT ATCCATAAAA ACCTTTAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39580319	mCV22803372	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss60545761	NES16558033	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	A		A	T	A	A		A	A	A	T		T
ss145227475	ENSMUSSNP2481122	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss325312330	CHEV_17_18007460	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29525790					SNP	T	T	A	T	A	A	A	A	T	A	A	T	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545761	NES16558033	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090758 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	643 bp proximal
Tssr5021	transcription start site region 5021	645 bp upstream
Tssr5022	transcription start site region 5022	669 bp upstream
Tssr5023	transcription start site region 5023	1198 bp downstream
Tssr142818	transcription start site region 142818	1467 bp upstream