rs29525826 SNP Detail

Summary

• ID
  rs29525826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAATGAGAGG GAACCATTTT CAGTAAATAG GGCAGCTTGG CACTCTACTC TCTAGAGCAG
  ACAACCTATC TATCAGCCCA CCTCAGTCGG GGTTTTTTCC TGCCTCCCCA AGGGTCTTTC
  CTTTTTCTGT GTTTCTTGGG AACAGCTGGA GACTGAAGGA CATTTGAAAC TTGTTTTTAG
  AACAGTACCC AGCCCGCCTC TTTGGAGCTT TTAAACTTCT GAAGATAGGC AATCAGATAA
  GACTGGTCCA ATTAGGCACT ACAAAACAGC AGCAAAAAAA AAAAAAAAAA AAAAAAAAAA
  R
  AGAGAGAGAG GGAGGCCTAC ACAGGCCCTC TGGGACACCC TCTGAAGCCT GTTAGCTGCA
  GAAAGGCAAG GCTTTATTGG GAGGTGGCTG CAACTTCCAC AGGATGCTAA AAAAATTAAA
  CTCACATACA CACAAACTCC AACTAGCAGA GCACTGGTCT ACATCTCTCT CAACTGGAAC
  AAAACAAAGA CAATTTCAAA CTATGGATAC AAATCTAACA CCCCTGTATT TACTCGGTCC
  CTTAGAATAC ATGGGCAACA GAGTAATACT GAAAACCAAG GCACTTCCTT GTAAAATGAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45825328	mCV23024591	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29525826					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294961 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	958 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1674 bp upstream
Tssr53620	transcription start site region 53620	29 bp upstream
Tssr53621	transcription start site region 53621	477 bp downstream