rs29525986 SNP Detail

Summary

• ID
  rs29525986
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106605734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC ATGAGGTCCA CGCTACTCCG
  S
  GGATCAGCCG CCGCCGGGAC CAAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45824270	mCV24423132	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29525986					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106605734 () rs orientation: forward

Symbol	Name	Function Class
Barhl2	BarH like homeobox 2	within coordinates
Cpgi16165	CpG island 16165	within coordinates
Gm33151	predicted gene, 33151	817 bp upstream
Rr123962	regulatory region 123962	within coordinates
Tssr47756	transcription start site region 47756	811 bp upstream
Tssr52338	transcription start site region 52338	75 bp downstream
Tssr52339	transcription start site region 52339	541 bp downstream
Tssr52340	transcription start site region 52340	587 bp downstream
Tssr52341	transcription start site region 52341	609 bp downstream