rs29526075 SNP Detail

Summary

• ID
  rs29526075
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGGGA GAGAGAGAGA
  GAGAAATTAT GGCATCCCTC ACACCCTGCT CGCCCTCGGG GAACCACATT AATATTAATC
  TAGACGAATG ATTGAATGTC CGGGATTTAT TCGGGCCCGG GTAAAGAAGG ACCCGCAGCT
  GGGTCGCGTT TCCTTCCGGT CACCTGAGTG TTTCTGCAGC TCAGATTCAG TGGGACTTCT
  M
  CTCTCAGAAG TGGTAGGATG TGGGTGGGTG TGCCGGCCTG TGTGATGTGA GCCCGAGCAG
  ATGTCCAGGG AGTGATGGGG AGTGCCAAGG CTTCTCCAAG GATTGGGGAC GGAGGGGCAT
  CCCGGGTCTC AGCGCTTGGC CCAGCACAGG GTGACCCAGG GCCACTCAGA CTCGAGAGGA
  AACAATAGCG ACTCCTTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45327973	mCV23733490	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss320439896	CHEV_2_102498457	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29526075					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	294 bp proximal
Gm57687	predicted gene, 57687	1400 bp upstream
Rr561712	regulatory region 561712	1635 bp distal
Rr561713	regulatory region 561713	within coordinates
Rr561714	regulatory region 561714	491 bp proximal
Rr561715	regulatory region 561715	491 bp proximal
Rr561716	regulatory region 561716	992 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	359 bp upstream
Tssr19098	transcription start site region 19098	61 bp downstream
Tssr19099	transcription start site region 19099	within coordinates
Tssr19100	transcription start site region 19100	276 bp upstream
Tssr19101	transcription start site region 19101	340 bp upstream
Tssr19102	transcription start site region 19102	377 bp upstream
Tssr19103	transcription start site region 19103	426 bp upstream
Tssr19104	transcription start site region 19104	452 bp upstream
Tssr19105	transcription start site region 19105	518 bp upstream
Tssr19106	transcription start site region 19106	543 bp upstream
Tssr19107	transcription start site region 19107	554 bp upstream
Tssr19108	transcription start site region 19108	597 bp upstream
Tssr19109	transcription start site region 19109	633 bp upstream
Tssr19110	transcription start site region 19110	913 bp upstream