rs29526918 SNP Detail

Summary

• ID
  rs29526918
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123127030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGAAA AGGCAGCAAG
  AAACAACCAA AAAAATAAAT AGATAGATAA ATCGATCATA TACCAGATAC AGATTTGGGG
  GAGAAAAAAA AAGCTACACA CCAATCTTCT TCCAGAGTCT TTCTCTGCCT CCATTTTTTT
  AGGAGAGTTC ACCAATTAAT TGTCAACACT CCTGCCCCCT GCATTTTGGC GGAGGGGGAA
  M
  GGAGGGAAGA CCAAAGAAAA GAAAGCAAAA AAATAAATAA ATAGAGCAAG CCAGAGCCGA
  TATCTACAAA GTTTTGCACC AACACTTAAG CAGATCCGTT TGCAAAGTCC TAGGAAACCA
  TTTTCAGCAG TTGTGGGGGG GGAGGCGTCG ACGTCATAAT CCCCGGAACG TAAACATTGT
  TGCCGATCGC GCTCGGAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45828789	mCV24599795	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss321670132	CHEV_5_123438976	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29526918					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123127030 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	387 bp upstream
Cpgi16565	CpG island 16565	238 bp distal
Cpgi16566	CpG island 16566	95 bp proximal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	1839 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	within coordinates
Tssr48729	transcription start site region 48729	1355 bp downstream
Tssr48730	transcription start site region 48730	275 bp upstream
Tssr48731	transcription start site region 48731	298 bp upstream
Tssr48732	transcription start site region 48732	323 bp upstream
Tssr48733	transcription start site region 48733	381 bp upstream
Tssr48734	transcription start site region 48734	608 bp upstream
Tssr48735	transcription start site region 48735	751 bp upstream
Tssr48736	transcription start site region 48736	777 bp upstream
Tssr48737	transcription start site region 48737	951 bp upstream
Tssr48738	transcription start site region 48738	1791 bp upstream
Tssr48739	transcription start site region 48739	1808 bp upstream
Tssr48740	transcription start site region 48740	1823 bp upstream
Tssr48741	transcription start site region 48741	1888 bp upstream
Tssr53168	transcription start site region 53168	1520 bp upstream
Tssr53169	transcription start site region 53169	441 bp upstream
Tssr53170	transcription start site region 53170	262 bp upstream
Tssr53171	transcription start site region 53171	76 bp downstream
Tssr53172	transcription start site region 53172	119 bp downstream
Tssr53173	transcription start site region 53173	293 bp downstream
Tssr53174	transcription start site region 53174	316 bp downstream
Tssr53175	transcription start site region 53175	1318 bp downstream
Tssr53176	transcription start site region 53176	1437 bp downstream
Tssr53177	transcription start site region 53177	1493 bp downstream
Tssr53178	transcription start site region 53178	1510 bp downstream
Tssr53179	transcription start site region 53179	1551 bp downstream
Tssr53180	transcription start site region 53180	1566 bp downstream