rs29527005 SNP Detail

Summary

• ID
  rs29527005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32523000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGAGCTGA CCTTCTCGGT AGGAAAGAGC TCTGAAATCC
  AAATCTAGGT ATCCAAGGCT GGAGTCATCG ACCTTATTAA ATTTCTAGAA ATCTGCTTCA
  K
  TGTCTTTGTG AGCAGGTCAG TTTTAACATT TCTCGAAGGC ACTAGAGTTT CAAGGCTACT
  CTAACCTGTG AATCTTCTGT GAACATTAGC AGTTTGCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39082721	mCV24719034	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss148847931	ENSMUSSNP2270337	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss324311982	CHEV_13_32430886	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29527005					SNP	T	T	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32523000 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	62 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	277 bp upstream
Rr369665	regulatory region 369665	97 bp downstream
Rr476844	regulatory region 476844	269 bp distal
Rr476845	regulatory region 476845	within coordinates
Tssr121995	transcription start site region 121995	475 bp upstream
Tssr121996	transcription start site region 121996	453 bp upstream
Tssr121997	transcription start site region 121997	357 bp upstream